Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJEB39189

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 4000 whole-genome sequencing dataset from Saccharomyces cerevisiae provides 1.89 billion reads and 283 billion bases at an extraordinary 23,666× mean coverage, supporting ultradeep resequencing for detecting ultralow-frequency variants and structural variants in repetitive regions. The exceptional depth (far exceeding standard 50–100×) enables precise copy-number variation mapping and high-resolution population genomics. Researchers can leverage this for experimental-evolution studies and creating high-confidence haplotype references.

Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
199 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 283994562600 reported
total reads 1893297084 reported
mean coverage 23666.2 extrapolated
n content pct 0.001 measured
pct q20 bases 99.1 measured
pct q30 bases 97.5 measured
gc content pct 38.2 measured
mean read length 150 measured
mean base quality 39.9 measured
adapter content pct 0.12 measured
duplication rate pct 22.93 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 23666.2 extrapolated ×1.2 100%
pct q30 bases 97.5 measured ×1 100%
duplication rate pct 22.93 measured ×0.5 53%
adapter content pct 0.12 measured ×0.4 100%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0