Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJEB39253

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

60/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Xenopus laevis (African clawed frog) amplicon sequencing via Illumina MiSeq with 24.9 million reads and 12.4 billion bases at good quality (92.3% Q20, 88.1% Q30). The 49.5% GC and 18 files suggest targeted profiling of microbiota or developmental samples. This amphibian dataset suits studying metamorphosis-associated microbiome changes or immune development in this classic vertebrate model.

Data type / assay
amplicon
Organism
Xenopus laevis
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
18 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 12455168893 reported
total reads 24900996 reported
n content pct 0 measured
pct q20 bases 92.3 measured
pct q30 bases 88.1 measured
gc content pct 49.5 measured
mean read length 250.5 measured
mean base quality 35 measured
adapter content pct 94.87 measured
duplication rate pct 58.97 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 60/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.1 measured ×1 91%
adapter content pct 94.87 measured ×0.5 0%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0