PRJEB39293

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina MiSeq high-coverage WGS of Enterobacter cloacae delivers 103.9 billion bases at 96.8% Q20 and 90.6% Q30. Extreme depth supports comprehensive pan-genome and antimicrobial-resistance characterization of this opportunistic pathogen.

Data type / assay

WGS

Organism

Enterobacter cloacae

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

422 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 103978298427 reported

total reads 442244742 reported

n content pct 0.038 measured

pct q20 bases 96.8 measured

pct q30 bases 90.6 measured

gc content pct 54.9 measured

mean read length 180 measured

mean base quality 35.5 measured

adapter content pct 0 measured

duplication rate pct 10.2 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.6 measured ×1 100%

duplication rate pct 10.2 measured ×0.5 93%

adapter content pct 0 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0