Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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PRJEB42567

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This NextSeq 500 whole-genome sequencing dataset from dietary supplements metagenome provides 814 million reads and 61.1 billion bases with high quality (94.8% Q20, 92.7% Q30), enabling species-level community profiling of microbial and fungal contaminants. The 40.8% GC spans typical environmental-microbe ranges; the depth supports detecting pathogenic organisms at rare frequencies. This dataset is valuable for dietary supplement safety assessment and regulatory-compliance screening.

Data type / assay
WGS
Organism
dietary supplements metagenome
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
71 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 61118803575 reported
total reads 814917381 reported
n content pct 0.047 measured
pct q20 bases 94.8 measured
pct q30 bases 92.7 measured
gc content pct 40.8 measured
mean read length 75 measured
mean base quality 34.1 measured
adapter content pct 6.27 measured
duplication rate pct 6.63 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.7 measured ×1 100%
duplication rate pct 6.63 measured ×0.5 100%
adapter content pct 6.27 measured ×0.4 62%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0