PRJEB42928

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of *Streptococcus dysgalactiae* via Illumina MiSeq with 247 bp reads and high quality (98.4% Q20, 95.5% Q30), enabling reliable variant calling and comparative genomics. Platform choice and read length support robust assembly and functional annotation of this pathogenic streptococcus.

Data type / assay

WGS

Organism

Streptococcus dysgalactiae

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

124 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 20829115213 reported

total reads 84560160 reported

n content pct 0.005 measured

pct q20 bases 98.4 measured

pct q30 bases 95.5 measured

gc content pct 40.2 measured

mean read length 274 measured

mean base quality 36.7 measured

adapter content pct 0 measured

duplication rate pct 17.39 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

duplication rate pct 17.39 measured ×0.5 71%

adapter content pct 0 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0