Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB4654

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This AB SOLiD 4 System whole-genome sequencing dataset from Saccharomyces pastorianus comprises 192 million reads and 9.6 billion bases but shows degraded quality (53.7% Q20, 25.4% Q30) characteristic of this obsolete platform. The anomalous 0% GC content is a major data-quality red flag suggesting processing errors or calibration failure. Despite platform age, researchers should obtain raw sequence files and verify independently; if correctable, the dataset may retain utility for strain identification, though modern resequencing is recommended for genomics applications.

Data type / assay
WGS
Organism
Saccharomyces pastorianus
Instrument
AB SOLiD 4 System
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 9644917900 reported
total reads 192898358 reported
n content pct 0 measured
pct q20 bases 53.7 measured
pct q30 bases 25.4 measured
gc content pct 0 measured
mean read length 51 measured
mean base quality 19.3 measured
adapter content pct 0 measured
duplication rate pct 0.17 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 25.4 measured ×1 0%
duplication rate pct 0.17 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0