Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB46875

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

62/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This HiSeq X Ten whole-genome sequencing dataset from Homo sapiens comprises 419 million reads and 25.7 billion bases at 8.3× mean coverage with exceptional quality (99.9% Q20, 99.6% Q30), providing high-fidelity short-read coverage for rare-variant and structural-variant detection. The near-perfect quality metrics are consistent with modern Illumina workflows; the coverage supports population-scale variant surveys and genome-wide association studies. Researchers can confidently apply this for de novo mutation discovery and variant-calling algorithm validation.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
18 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 25752124052 reported
total reads 419934183 reported
mean coverage 8.3 extrapolated
n content pct 0.004 measured
pct q20 bases 99.9 measured
pct q30 bases 99.6 measured
gc content pct 42.6 measured
mean read length 45.4 measured
mean base quality 40.9 measured
adapter content pct 0 measured
duplication rate pct 0.37 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 62/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 8.3 extrapolated ×1.2 1%
pct q30 bases 99.6 measured ×1 100%
duplication rate pct 0.37 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0