PRJEB4733

BioProject first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

70/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina Genome Analyzer II short-read transcriptomics of Schizosaccharomyces pombe yields 10.9 billion bases at exceptional 97.6% Q20 and 97.1% Q30. Despite platform age, the high base quality supports reliable gene expression quantification and isoform mapping in this fission-yeast model organism.

Data type / assay

bulk-RNA-seq

Organism

Schizosaccharomyces pombe

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

17 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10904688187 reported

total reads 256397538 reported

n content pct 0.113 measured

pct q20 bases 97.6 measured

pct q30 bases 97.1 measured

gc content pct 52 measured

mean read length 50 measured

mean base quality 36.7 measured

adapter content pct 92.62 measured

duplication rate pct 66.33 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 70/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.1 measured ×1 100%

mean base quality 36.7 measured ×0.6 100%

adapter content pct 92.62 measured ×0.4 0%

duplication rate pct 66.33 measured ×0.4 19%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0