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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
47/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Mycobacterium tuberculosis
Instrument
GridION
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
269 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
103583094630
reported
total reads
257244986
reported
n content pct
0
measured
pct q20 bases
68.1
measured
pct q30 bases
33.9
measured
gc content pct
65.2
measured
mean read length
4164.3
measured
mean base quality
23.5
measured
adapter content pct
0.01
measured
duplication rate pct
0.01
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
33.9
measured
×1
0%
duplication rate pct
0.01
measured
×0.5
100%
adapter content pct
0.01
measured
×0.4
100%
QC cost
24 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0