PRJEB49206

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NovaSeq 6000 massive deep sequencing of Bifidobacterium longum subsp. infantis yields 10.3 trillion bases at outstanding 99% Q20 across 75.4 billion reads. Extreme coverage supports strain-level variation and evolutionary-rate estimation in this infant-gut commensal.

Data type / assay

WGS

Organism

Bifidobacterium longum subsp. infantis

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

477 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10348815268163 reported

total reads 75413704252 reported

n content pct 0.016 measured

pct q20 bases 99 measured

pct q30 bases 96.3 measured

gc content pct 43.5 measured

mean read length 139.2 measured

mean base quality 36.4 measured

adapter content pct 0 measured

duplication rate pct 3.7 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.3 measured ×1 100%

duplication rate pct 3.7 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0