Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB5196

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 whole-genome sequencing dataset from Phascolarctos cinereus (koala) provides 2.04 billion reads and 412 billion bases with good quality (96.5% Q20, 90.6% Q30), supporting comprehensive resequencing of this endangered marsupial. The 39% GC is typical for mammals; the depth enables population-level variant discovery and phylogenetic analysis for conservation management. Researchers studying marsupial genomics or disease susceptibility can leverage this for marker development and breeding-program design.

Data type / assay
WGS
Organism
Phascolarctos cinereus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
15 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 412196134446 reported
total reads 2040574923 reported
n content pct 0.03 measured
pct q20 bases 96.5 measured
pct q30 bases 90.6 measured
gc content pct 39 measured
mean read length 101 measured
mean base quality 35.7 measured
adapter content pct 0.02 measured
duplication rate pct 0.78 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.6 measured ×1 100%
duplication rate pct 0.78 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0