Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB5198

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 whole-genome sequencing dataset from Gasterosteus aculeatus (three-spined stickleback) comprises 5.1 billion reads and 745 billion bases with exceptional quality (99.1% Q20, 96.8% Q30), providing comprehensive resequencing of this model fish. The 44.6% GC is typical for teleosts; the massive scale supports population genomics and fine-mapping of morphological and behavioral polymorphisms. Researchers studying adaptive radiation and ecological speciation can leverage this for detecting selection signatures.

Data type / assay
WGS
Organism
Gasterosteus aculeatus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
560 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 745499373756 reported
total reads 5168957655 reported
n content pct 0.01 measured
pct q20 bases 99.1 measured
pct q30 bases 96.8 measured
gc content pct 44.6 measured
mean read length 36 measured
mean base quality 38.3 measured
adapter content pct 0 measured
duplication rate pct 3.05 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%
duplication rate pct 3.05 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0