PRJEB52977

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

DNBSEQ-G400 hybrid (short + long-read) WGS of a synthetic metagenome yields 231.7 billion bases at 96.9% Q20 across 2.0 billion reads. Hybrid read strategy enables both accuracy and structural resolution for complete assembly of complex microbial communities, overcoming limitations of single-read-type approaches.

Data type / assay

WGS

Organism

synthetic metagenome

Instrument

DNBSEQ-G400

Platform

DNBSEQ

Read type

hybrid (short+long)

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

42 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 231691477829 reported

total reads 2001899319 reported

n content pct 0 measured

pct q20 bases 96.9 measured

pct q30 bases 90.6 measured

gc content pct 48.5 measured

mean read length 99.7 measured

mean base quality 34.1 measured

adapter content pct 0 measured

duplication rate pct 0.86 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.6 measured ×1 100%

duplication rate pct 0.86 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0