Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB5480

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 amplicon dataset from Homo sapiens contains 1.7 billion reads and 321 billion bases with exceptional quality (99.5% Q20, 99.3% Q30), representing massive-scale targeted amplicon sequencing of specific genomic regions. The 40.4% GC and unparalleled depth support deep allele enumeration and rare-allele detection. This dataset is valuable for large-scale clinical screening, molecular epidemiology, and population-frequency estimation at targeted genomic loci.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
1,684 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 321175481727 reported
total reads 1724684284 reported
n content pct 0.009 measured
pct q20 bases 99.5 measured
pct q30 bases 99.3 measured
gc content pct 40.4 measured
mean read length 80.2 measured
mean base quality 59.3 measured
adapter content pct 1.28 measured
duplication rate pct 22.33 measured
mean target coverage 5180.2 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.3 measured ×1 100%
adapter content pct 1.28 measured ×0.5 98%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0