PRJEB5874

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Canis lupus familiaris WGS (HiSeq 2000); grade A—excellent, ready for genome assembly and variant calling. Zero adapter contamination and minimal duplication (6.12%) combined with Q30 of 90.5% represent near-ideal short-read sequencing metrics; all quality thresholds support high-confidence SNP discovery.

Data type / assay

WGS

Organism

Canis lupus familiaris

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 101552136094 reported

total reads 502733347 reported

n content pct 0.068 measured

pct q20 bases 95.9 measured

pct q30 bases 90.5 measured

gc content pct 41.2 measured

mean read length 101 measured

mean base quality 35.6 measured

adapter content pct 0 measured

duplication rate pct 6.12 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.5 measured ×1 100%

duplication rate pct 6.12 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0