Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB59568

BioProject first seen 2023

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Oxford Nanopore long-read WGS of Candida albicans via GridION produces 10.5 billion bases across ~2.8 million very long reads (mean ~3.7 kb), with 59.5% Q20 bases—typical nanopore accuracy. This dataset enables de novo assembly and structural variant discovery at a genomic scale in this medically important fungal pathogen, though base-level SNP confidence requires consensus correction or supplementary short-read polishing.

Data type / assay
WGS
Organism
Candida albicans
Instrument
GridION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
266 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10485591754 reported
total reads 2807028 reported
n content pct 0 measured
pct q20 bases 59.5 measured
pct q30 bases 16.8 measured
gc content pct 54.3 measured
mean read length 5245.1 measured
mean base quality 21 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 16.8 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0