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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
65/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Bos taurus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
36852519325
reported
total reads
159741857
reported
mean coverage
13.6
extrapolated
n content pct
0.017
measured
pct q20 bases
96.8
measured
pct q30 bases
87.6
measured
gc content pct
42.6
measured
mean read length
117.3
measured
mean base quality
34.8
measured
adapter content pct
0
measured
duplication rate pct
11.58
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 65/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
13.6
extrapolated
×1.2
26%
pct q30 bases
87.6
measured
×1
88%
duplication rate pct
11.58
measured
×0.5
89%
adapter content pct
0
measured
×0.4
100%
QC cost
19 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0