Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB6529

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Ultra-deep whole-genome sequencing of Saccharomyces cerevisiae via HiSeq 2000 achieves 5234× mean coverage from 62.8 billion bases at 92.5% Q20. Exceptional depth enables rare variant discovery and allele-frequency estimation in this model organism, though this extreme depth is often redundant for typical genetic studies.

Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
17 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 62814231200 reported
total reads 314071156 reported
mean coverage 5234.5 extrapolated
n content pct 0.031 measured
pct q20 bases 92.5 measured
pct q30 bases 87.2 measured
gc content pct 38.5 measured
mean read length 100 measured
mean base quality 34.3 measured
adapter content pct 0.1 measured
duplication rate pct 4.45 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 5234.5 extrapolated ×1.2 100%
pct q30 bases 87.2 measured ×1 86%
duplication rate pct 4.45 measured ×0.5 100%
adapter content pct 0.1 measured ×0.4 100%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0