Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJEB7021

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq whole-genome sequencing dataset from Aeromonas australiensis provides 2.1 million reads and 839 million bases with moderate quality (78.7% Q20, 64.5% Q30), supporting draft genome assembly of this freshwater bacterium. The 57.5% GC is typical for the genus; the shallow depth limits structural-variant resolution and repetitive-region assembly. Researchers pursuing finished genomes should consider supplementary long-read sequencing or reference-guided approaches to resolve mobile genetic elements and plasmids.

Data type / assay
WGS
Organism
Aeromonas australiensis
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 839225233 reported
total reads 2121155 reported
n content pct 0.025 measured
pct q20 bases 78.7 measured
pct q30 bases 64.5 measured
gc content pct 57.5 measured
mean read length 190 measured
mean base quality 28.8 measured
adapter content pct 0 measured
duplication rate pct 7.86 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 64.5 measured ×1 0%
duplication rate pct 7.86 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0