Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJEB7024

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq whole-genome sequencing dataset from Aeromonas caviae delivers 1.3 million reads and 542 million bases with good quality (92.2% Q20, 84.2% Q30), supporting draft genome assembly of this freshwater pathogen. The elevated 61.2% GC content is unusual for Aeromonas and warrants verification against reference genomes (possible contamination or atypical strain). Moderate depth suggests single-pass sequencing; researchers needing finished assemblies should pursue long-read or additional short-read coverage.

Data type / assay
WGS
Organism
Aeromonas caviae
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 542693643 reported
total reads 1321562 reported
n content pct 0.042 measured
pct q20 bases 92.2 measured
pct q30 bases 84.2 measured
gc content pct 61.2 measured
mean read length 229.2 measured
mean base quality 33.7 measured
adapter content pct 0 measured
duplication rate pct 8.21 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.2 measured ×1 71%
duplication rate pct 8.21 measured ×0.5 99%
adapter content pct 0 measured ×0.4 100%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0