Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJEB7027

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq whole-genome sequencing dataset from Aeromonas encheleia provides 1.5 million reads and 657 million bases with good quality (84.8% Q20, 73.4% Q30), suitable for draft genome assembly. The elevated 61.9% GC is unusual for Aeromonas and suggests strain variation or sequencing artifact; the moderate depth limits structural-variant detection. Researchers pursuing comparative Aeromonas genomics should pair this with reference-guided approaches or supplementary sequencing for improved assembly contiguity and accuracy.

Data type / assay
WGS
Organism
Aeromonas encheleia
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 657841376 reported
total reads 1550015 reported
n content pct 0.01 measured
pct q20 bases 84.8 measured
pct q30 bases 73.4 measured
gc content pct 61.9 measured
mean read length 208.4 measured
mean base quality 31 measured
adapter content pct 0 measured
duplication rate pct 8.42 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 73.4 measured ×1 17%
duplication rate pct 8.42 measured ×0.5 99%
adapter content pct 0 measured ×0.4 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0