Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB7030

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq whole-genome sequencing dataset from Aeromonas fluvialis provides 728,000 reads and 212 million bases with high quality (95.5% Q20, 90.5% Q30), supporting draft genome assembly of this freshwater bacterium. The 58% GC is consistent with Aeromonas; the shallow depth limits resolution of large structural variants and mobile genetic elements. Researchers pursuing complete genomes or pan-genome analysis should consider combining with reference-guided assembly or additional sequencing for improved contiguity.

Data type / assay
WGS
Organism
Aeromonas fluvialis
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 212911242 reported
total reads 728751 reported
n content pct 0.009 measured
pct q20 bases 95.5 measured
pct q30 bases 90.5 measured
gc content pct 58 measured
mean read length 146 measured
mean base quality 35.4 measured
adapter content pct 0 measured
duplication rate pct 16.05 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.5 measured ×1 100%
duplication rate pct 16.05 measured ×0.5 75%
adapter content pct 0 measured ×0.4 100%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0