Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJEB7035

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina MiSeq WGS of Aeromonas rivuli with moderate base quality (Q30 90.1%) but elevated adapter content (11.32%) and duplication (18.41%), which together drive the C-grade verdict. Adapter retention risks assembly/mapping accuracy; duplication suggests PCR bias or shallow sequencing relative to genome complexity. Evidence strength is low; proceed with caution and validate trimming and coverage uniformity before downstream analysis.

Data type / assay
WGS
Organism
Aeromonas rivuli
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 558495582 reported
total reads 1112541 reported
n content pct 0 measured
pct q20 bases 93.7 measured
pct q30 bases 90.1 measured
gc content pct 58.6 measured
mean read length 251 measured
mean base quality 35.2 measured
adapter content pct 11.32 measured
duplication rate pct 18.41 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.1 measured ×1 100%
duplication rate pct 18.41 measured ×0.5 68%
adapter content pct 11.32 measured ×0.4 26%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0