Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJEB7036

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq whole-genome sequencing dataset from Aeromonas salmonicida subsp. salmonicida (fish pathogen) delivers 1.3 million reads and 761 million bases with good quality (91.1% Q20, 80.3% Q30), supporting draft genome assembly and isolate typing. The 57.2% GC is characteristic; the shallow depth suggests focus on coding-region variant detection and plasmid recovery. Researchers in aquaculture pathogen surveillance should pair this with reference-guided assembly or supplementary sequencing for improved completeness.

Data type / assay
WGS
Organism
Aeromonas salmonicida subsp. salmonicida
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 761404437 reported
total reads 1368321 reported
n content pct 0.01 measured
pct q20 bases 91.1 measured
pct q30 bases 80.3 measured
gc content pct 57.2 measured
mean read length 273 measured
mean base quality 33.4 measured
adapter content pct 0 measured
duplication rate pct 16.4 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.3 measured ×1 52%
duplication rate pct 16.4 measured ×0.5 74%
adapter content pct 0 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0