PRJEB7041

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Aeromonas taiwanensis

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 312160182 reported

total reads 704401 reported

n content pct 0.027 measured

pct q20 bases 93.3 measured

pct q30 bases 89.3 measured

gc content pct 61.9 measured

mean read length 219.3 measured

mean base quality 35.1 measured

adapter content pct 0 measured

duplication rate pct 9.01 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.3 measured ×1 97%

duplication rate pct 9.01 measured ×0.5 97%

adapter content pct 0 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0