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Provenance — who produced it, who reused it
Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
6 further papers cite this accession but reuse could not be confirmed.
Deep data QC
45/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Ficedula albicollis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
200 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
4006654030826
reported
total reads
19366623259
reported
n content pct
0.003
measured
pct q20 bases
97.3
measured
pct q30 bases
0.3
measured
gc content pct
37.4
measured
mean read length
100
measured
mean base quality
25.4
measured
adapter content pct
0.02
measured
duplication rate pct
11.18
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 45/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
0.3
measured
×1
0%
duplication rate pct
11.18
measured
×0.5
90%
adapter content pct
0.02
measured
×0.4
100%
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0