Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB7653

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This 454 GS FLX Titanium whole-genome sequencing dataset from Pyricularia grisea comprises 26.8 million reads and 2.7 billion bases with moderate quality (85.5% Q20, 60.6% Q30). The platform's longer reads benefit assembly of repetitive fungal genomes (47.7% GC); however, older-platform error rates and limited depth constrain accuracy. Researchers pursuing comparative genomics or pathogenicity studies should supplement with modern short- or long-read sequencing for improved structural-variant confidence.

Data type / assay
WGS
Organism
Pyricularia grisea
Instrument
454 GS FLX Titanium
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
7 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2729832406 reported
total reads 26897657 reported
n content pct 0.04 measured
pct q20 bases 85.5 measured
pct q30 bases 60.6 measured
gc content pct 47.7 measured
mean read length 271.3 measured
mean base quality 30.7 measured
adapter content pct 0 measured
duplication rate pct 6.25 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 60.6 measured ×1 0%
duplication rate pct 6.25 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0