Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJEB8575

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2500 whole-genome sequencing dataset from Acinetobacter baumannii provides 9.2 million reads and 2.1 billion bases with excellent quality (97.8% Q20, 92.8% Q30), enabling high-confidence strain characterization and antibiotic-resistance profiling in this multidrug-resistant nosocomial pathogen. The 54% GC is characteristic; the moderate depth supports coding-region variant detection and plasmid recovery. Researchers in infection control and antimicrobial stewardship can leverage this for outbreak tracking and resistance-mechanism studies.

Data type / assay
WGS
Organism
Acinetobacter baumannii
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2109640812 reported
total reads 9268431 reported
n content pct 0.03 measured
pct q20 bases 97.8 measured
pct q30 bases 92.8 measured
gc content pct 54 measured
mean read length 126 measured
mean base quality 35.4 measured
adapter content pct 0 measured
duplication rate pct 21 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%
duplication rate pct 21 measured ×0.5 59%
adapter content pct 0 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0