Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB9434

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 1000 bulk RNA-seq dataset from Bacteroides cellulosilyticus WH2 comprises 2.1 billion reads and 81.7 billion bases with excellent quality (99.2% Q20, 97.6% Q30), enabling comprehensive transcriptomics of this carbohydrate-degrading gut bacterium. The 46.1% GC and exceptional depth support detecting polysaccharide-utilization gene clusters and growth-phase-dependent regulation. Researchers studying how dominant-gut bacteria forage dietary and host-derived glycans can leverage this for metabolic-pathway inference and comparative transcriptomics.

Data type / assay
bulk-RNA-seq
Organism
Bacteroides cellulosilyticus WH2
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
1,376 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 81756107080 reported
total reads 2130461852 reported
n content pct 0 measured
pct q20 bases 99.2 measured
pct q30 bases 97.6 measured
gc content pct 46.1 measured
mean read length 43 measured
mean base quality 39 measured
adapter content pct 0 measured
duplication rate pct 80.46 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.6 measured ×1 100%
mean base quality 39 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 80.46 measured ×0.4 0%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0