Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJEB9702

BioProject first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq amplicon dataset from mouse gut metagenome comprises 9.4 million reads with high quality (95.5% Q20, 93.7% Q30), providing robust profiling of microbial alpha and beta diversity in this well-studied model system. The 54.4% GC and consistent metrics are consistent with standard marker-gene amplicon protocols; the depth detects rare operational taxonomic units and developmental or treatment-induced shifts in community composition. Reuse for mouse microbiota-related phenotypes requires alignment of sample metadata (age, diet, genotype, perturbation).

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads), submitted files
N numbers (samples, groups)
347 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4311366358 reported
total reads 9459023 reported
n content pct 0.006 measured
pct q20 bases 95.5 measured
pct q30 bases 93.7 measured
gc content pct 54.4 measured
mean read length 227.9 measured
mean base quality 36.3 measured
adapter content pct 0 measured
duplication rate pct 92.55 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.7 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0