PRJEB9878

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Arabidopsis thaliana

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), submitted files

N numbers (samples, groups)

72 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 36373963922 reported

total reads 152788193 reported

mean coverage 269.4 extrapolated

n content pct 0.021 measured

pct q20 bases 97.9 measured

pct q30 bases 93.4 measured

gc content pct 43 measured

mean read length 101 measured

mean base quality 36.2 measured

adapter content pct 93.31 measured

duplication rate pct 5.32 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 269.4 extrapolated ×1.2 100%

pct q30 bases 93.4 measured ×1 100%

duplication rate pct 5.32 measured ×0.5 100%

adapter content pct 93.31 measured ×0.4 0%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0