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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
65/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
human gut metagenome
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
9 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
183008735380
reported
total reads
605989190
reported
n content pct
0.001
measured
pct q20 bases
100
measured
pct q30 bases
100
measured
gc content pct
49.9
measured
mean read length
151
measured
mean base quality
30
measured
adapter content pct
29.91
measured
duplication rate pct
24.53
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 65/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
100
measured
×1
100%
duplication rate pct
24.53
measured
×0.5
48%
adapter content pct
29.91
measured
×0.4
0%
QC cost
30 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0