Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA1211588

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

High-coverage amplicon sequencing from human samples. Grade A (100/100) reflects exceptional base quality (Q30 98.7%, Q20 99.3%) and zero adapter contamination. The duplication rate of 96.34% is expected and appropriate for targeted amplicon assays at 5,102× mean coverage; this is excellent-quality data.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
7,607 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 316343027934 reported
total reads 1238472367 reported
n content pct 0 measured
pct q20 bases 99.3 measured
pct q30 bases 98.7 measured
gc content pct 56.7 measured
mean read length 282 measured
mean base quality 37.8 measured
adapter content pct 0 measured
duplication rate pct 96.34 measured
mean target coverage 5102.3 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.7 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 84