Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA1291454

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

60/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
amplicon
Organism
insect metagenome
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
1,064 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7707885024 reported
total reads 13108648 reported
n content pct 0 measured
pct q20 bases 94.8 measured
pct q30 bases 87.9 measured
gc content pct 54.8 measured
mean read length 294 measured
mean base quality 35.2 measured
adapter content pct 27.04 measured
duplication rate pct 95.93 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 60/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.9 measured ×1 90%
adapter content pct 27.04 measured ×0.5 0%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 44