Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA12926

BioProject first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

21/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This AB 310 Genetic Analyzer capillary sequencing dataset from Entamoeba invadens IP1 contains 100,495 reads and 96.8 million bases with moderate quality (80% Q20, 65.4% Q30), representing an older single-pass Sanger-like protocol for eukaryotic genome surveying. The unusually low 31.4% GC warrants verification for potential sequencing bias or contamination. Modern researchers should treat this as a legacy resource requiring integration with contemporary sequencing technologies for structural accuracy and completeness.

Data type / assay
WGS
Organism
Entamoeba invadens IP1
Instrument
AB 310 Genetic Analyzer
Platform
CAPILLARY
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
7 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 96809100 reported
total reads 100495 reported
n content pct 0 measured
pct q20 bases 80 measured
pct q30 bases 65.4 measured
gc content pct 31.4 measured
mean read length 904.8 measured
mean base quality 33.2 measured
adapter content pct 0 measured
duplication rate pct 40.64 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 21/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 65.4 measured ×1 0%
duplication rate pct 40.64 measured ×0.5 0%
adapter content pct 0 measured ×0.4 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0