Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA1312446

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Arabidopsis thaliana
Instrument
DNBSEQ-G400
Platform
DNBSEQ
N numbers (samples, groups)
5 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1435776034 reported
total reads 63228066 reported
n content pct 0 measured
pct q20 bases 99.2 measured
pct q30 bases 96 measured
gc content pct 53 measured
mean read length 22.4 measured
mean base quality 35.4 measured
adapter content pct 0 measured
duplication rate pct 85.89 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96 measured ×1 100%
mean base quality 35.4 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 85.89 measured ×0.4 0%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 87