Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA163973

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
methylation
Organism
Agrilus planipennis
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
N numbers (samples, groups)
251 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5284977307775.001 reported
total reads 26002991330 reported
n content pct 0.002 measured
pct q20 bases 98.5 measured
pct q30 bases 95.7 measured
gc content pct 41.4 measured
mean read length 101 measured
mean base quality 37 measured
adapter content pct 9.01 measured
duplication rate pct 18.05 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published methylation thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.7 measured ×1 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 84