Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA169497

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This 454 GS FLX Titanium amplicon dataset from viral samples comprises 1.5 million reads and 832 million bases with moderate quality (89.4% Q20, 69% Q30), suitable for targeted viral community profiling via marker-gene amplification. The 53.5% GC and platform's longer reads aid in resolving hypervariable regions and avoiding primer-related artifacts. Reusers should confirm the specific viral target and primer sequences to assess suitability for their pathogen-surveillance or metagenomics questions.

Data type / assay
amplicon
Organism
Viruses
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
84 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 832522652 reported
total reads 1535213 reported
n content pct 0.034 measured
pct q20 bases 89.4 measured
pct q30 bases 69 measured
gc content pct 53.5 measured
mean read length 402.6 measured
mean base quality 32.4 measured
adapter content pct 0 measured
duplication rate pct 98.17 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 69 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0