Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA182049

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This 454 GS FLX amplicon dataset from anaerobic digester metagenome samples contains 350,894 reads and 117 million bases with remarkably high quality (99.3% Q20, 99% Q30), supporting robust profiling of methane-producing and fermentative communities. The 53.7% GC and amplicon-based approach enable taxonomic binning and functional prediction relevant to biogas production and waste-treatment optimization. Reusers should confirm the amplicon target and digester operating conditions (temperature, feedstock) to contextualize findings for their systems.

Data type / assay
amplicon
Organism
anaerobic digester metagenome
Instrument
454 GS FLX
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
25 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 117361528 reported
total reads 350894 reported
n content pct 0 measured
pct q20 bases 99.3 measured
pct q30 bases 99 measured
gc content pct 53.7 measured
mean read length 276.5 measured
mean base quality 38.1 measured
adapter content pct 0 measured
duplication rate pct 95.63 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0