Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJNA197379

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq (98bp, HiSeq 2000, soybean). Grade A (100/100): reference-quality dataset across all metrics. Mean base quality 37.3 (highest in collection), Q30 96.5%, and minimal duplication (10.12%) combine to support any downstream application with high confidence.

Data type / assay
bulk-RNA-seq
Organism
Glycine max
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
30 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 376749378430 reported
total reads 2000151272 reported
n content pct 0.002 measured
pct q20 bases 99.3 measured
pct q30 bases 96.5 measured
gc content pct 44.9 measured
mean read length 98.4 measured
mean base quality 37.3 measured
adapter content pct 0 measured
duplication rate pct 10.12 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%
mean base quality 37.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 10.12 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 59