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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
68/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WES
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
198 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
2570815769841
reported
total reads
13440433013
reported
n content pct
0.154
measured
pct q20 bases
81
measured
pct q30 bases
68.1
measured
gc content pct
45.6
measured
mean read length
100
measured
mean base quality
29
measured
adapter content pct
0.02
measured
duplication rate pct
6.63
measured
mean target coverage
41464.8
extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.
mean target coverage
41464.8
extrapolated
×1.2
100%
pct q30 bases
68.1
measured
×1
0%
duplication rate pct
6.63
measured
×0.5
100%
adapter content pct
0.02
measured
×0.4
100%
QC cost
25 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0