PRJNA236426

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS on AB 5500xl SOLiD platform for Apis cerana (Asian honeybee) with unusually low reported Q30 (50%) despite claimed high read count. This older-platform dataset is challenging for modern analysis pipelines; primarily useful as a historical reference or for exploring platform-specific biases in bee genomics.

Data type / assay

WGS

Organism

Apis cerana

Instrument

AB 5500xl Genetic Analyzer

Platform

ABI_SOLID

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

807 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 303825574125 reported

total reads 4051007655 reported

n content pct 0 measured

pct q20 bases 70.1 measured

pct q30 bases 50 measured

gc content pct 0 measured

mean read length 76 measured

mean base quality 24.3 measured

adapter content pct 0 measured

duplication rate pct 1.32 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 50 measured ×1 0%

duplication rate pct 1.32 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0