Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA237062

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

454 GS FLX+ pyrosequencing amplicon data from leaf microbiota yields 440.6 million bases across 601k reads with 70.5% Q20 and elevated N-content (0.137%). Medium-length reads (typical ~400bp) and lower accuracy offset by reduced cost; suitable for preliminary phylogenetic profiling of plant phyllosphere communities.

Data type / assay
amplicon
Organism
leaf metagenome
Instrument
454 GS FLX+
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
54 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 440573180 reported
total reads 601392 reported
n content pct 0.137 measured
pct q20 bases 70.5 measured
pct q30 bases 44.8 measured
gc content pct 55 measured
mean read length 751.7 measured
mean base quality 26.4 measured
adapter content pct 0 measured
duplication rate pct 86.69 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 44.8 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0