Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA238913

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon sequencing from human metagenome on 454 GS FLX Titanium platform generating longer reads than contemporary short-read technology. This older-platform microbiome dataset enables microbial community profiling and serves as a historical reference for comparing 454 versus Illumina amplicon methodologies in human-associated samples.

Data type / assay
amplicon
Organism
human metagenome
Instrument
454 GS FLX Titanium
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
16 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3538256986 reported
total reads 11134432 reported
n content pct 0.016 measured
pct q20 bases 94.9 measured
pct q30 bases 84.9 measured
gc content pct 43.9 measured
mean read length 216.1 measured
mean base quality 36 measured
adapter content pct 0 measured
duplication rate pct 79.61 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.9 measured ×1 75%
adapter content pct 0 measured ×0.5 100%
QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0