PRJNA239251

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Aliarcobacter butzleri

Instrument

Illumina HiSeq 1000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

39,109 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7583949459729.001 reported

total reads 19158066640 reported

n content pct 0.011 measured

pct q20 bases 97.6 measured

pct q30 bases 96.6 measured

gc content pct 33.2 measured

mean read length 240.7 measured

mean base quality 37.3 measured

adapter content pct 0 measured

duplication rate pct 27.46 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.6 measured ×1 100%

duplication rate pct 27.46 measured ×0.5 39%

adapter content pct 0 measured ×0.4 100%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0