Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA242140

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Extreme-depth whole-genome sequencing of Saccharomyces cerevisiae (baker's yeast) via HiSeq 2000 with extraordinary extrapolated coverage of ~3817×, spanning ~206M reads. This dataset is optimal for detecting rare mutations, structural variants, and heterozygous sites in a widely-used model organism with a ~12 Mb reference genome. The exceptional depth enables variant calling at very low allele frequencies and high-confidence consensus genome finishing.

Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
262 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 45802953100 reported
total reads 206067928 reported
mean coverage 3816.9 extrapolated
n content pct 0.003 measured
pct q20 bases 97.3 measured
pct q30 bases 92.3 measured
gc content pct 39.6 measured
mean read length 100 measured
mean base quality 36 measured
adapter content pct 10.47 measured
duplication rate pct 17.25 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 3816.9 extrapolated ×1.2 100%
pct q30 bases 92.3 measured ×1 100%
duplication rate pct 17.25 measured ×0.5 71%
adapter content pct 10.47 measured ×0.4 32%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0