Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA242354

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Homo sapiens amplicon sequencing (454 platform) with good measured quality (B grade). Q30 at 86.3% meets amplicon standards, and adapter content is absent. However, mean target coverage is only 5.4× (extrapolated, pending deep measured pass)—marginal for rare-allele detection; recommend coverage validation before heavy reuse.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
454 GS FLX
Platform
LS454
Files available
FASTQ (raw reads)
N numbers (samples, groups)
60 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 333216875 reported
total reads 1490550 reported
n content pct 0.011 measured
pct q20 bases 96.7 measured
pct q30 bases 86.3 measured
gc content pct 53.1 measured
mean read length 325.5 measured
mean base quality 36.3 measured
adapter content pct 0 measured
duplication rate pct 99.26 measured
mean target coverage 5.4 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.3 measured ×1 82%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0