Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA244441

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

39/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S rRNA amplicon sequencing of vaginal metagenome via Ion Torrent PGM with ~4.1M reads at moderate quality (71.8% Q30), representing targeted amplicon profiling of female urogenital microbiota. This dataset enables taxonomic profiling of health-associated bacterial communities and can address questions about microbiota composition in reproductive health. The modest read depth and lower Q30 rate suggest careful taxonomic filtering will be necessary before interpreting rare taxa.

Data type / assay
amplicon
Organism
vaginal metagenome
Instrument
Ion Torrent PGM
Platform
ION_TORRENT
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
153 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 304092690 reported
total reads 4105000 reported
n content pct 0 measured
pct q20 bases 94.6 measured
pct q30 bases 71.8 measured
gc content pct 51.7 measured
mean read length 74.5 measured
mean base quality 30.2 measured
adapter content pct 0 measured
duplication rate pct 88.32 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 39/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.8 measured ×1 9%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0