Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA244928

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S/18S rRNA amplicon sequencing of Sus scrofa domesticus (domestic pig) associated metagenome via MiSeq with ~9M short reads at moderate quality (85.9% Q30). This dataset enables taxonomic profiling of swine microbiota relevant to livestock health and nutrition studies. The modest read count and moderate quality suggest sequencing of specific body sites or limited sample multiplexing, suitable for targeted surveys rather than comprehensive microbiota characterization.

Data type / assay
amplicon
Organism
Sus scrofa domesticus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
17 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3471524264 reported
total reads 8990627 reported
n content pct 0.019 measured
pct q20 bases 90.8 measured
pct q30 bases 85.9 measured
gc content pct 53.9 measured
mean read length 247.5 measured
mean base quality 34.3 measured
adapter content pct 0.07 measured
duplication rate pct 92.15 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.9 measured ×1 80%
adapter content pct 0.07 measured ×0.5 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0