Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA245039

BioProject first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Hybrid short and long-read whole-genome sequencing of a hybrid between Schizosaccharomyces kambucha x S. pombe via HiSeq 2000 with ~9M reads at 97.5% Q30. This dataset enables genomic characterization of an engineered or natural yeast hybrid, useful for studying chromosome dynamics, meiotic pairing, and interspecific hybrid stability. The hybrid cross design enables interrogation of species boundaries and reproductive isolation mechanisms.

Data type / assay
WGS
Organism
'Schizosaccharomyces kambucha' x Schizosaccharomyces pombe
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 881576444 reported
total reads 8995678 reported
n content pct 0.029 measured
pct q20 bases 98.6 measured
pct q30 bases 97.5 measured
gc content pct 37.7 measured
mean read length 49 measured
mean base quality 38.8 measured
adapter content pct 0.02 measured
duplication rate pct 25.68 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.5 measured ×1 100%
duplication rate pct 25.68 measured ×0.5 45%
adapter content pct 0.02 measured ×0.4 100%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0